A Hybrid SIE-PDE Formulation Without Boundary Condition Requirement for Transverse Magnetic Electromagnetic Analysis

A hybrid surface integral equation partial differential equation (SIE-PDE) formulation without the boundary condition requirement is proposed to solve the transverse magnetic (TM) electromagnetic problems. In the proposed formulation, the computational domain is decomposed into two overlapping domains: the SIE and PDE domains. In the SIE domain, complex structures with piecewise homogeneous media, e.g., highly conductive media, are included. An equivalent model for those structures is constructed by replacing them with the background medium and introducing a surface equivalent electric current density on an enclosed boundary to represent their electromagnetic effects. The remaining computational domain and homogeneous background medium replaced domain consist of the PDE domain, in which inhomogeneous or non-isotropic media are included. Through combining the surface equivalent electric current density and the inhomogeneous Helmholtz equation, a hybrid SIE-PDE formulation is derived. It requires no boundary conditions, and is mathematically equivalent to the original physical model. Through careful construction of basis functions to expand electric fields and the equivalent current density, the discretized formulation is made compatible with the SIE and PDE domain interface. The accuracy and efficiency are validated through two numerical examples. Results show that the proposed SIE-PDE formulation can obtain accurate results, and significant performance improvements in terms of CPU time and memory consumption compared with the FEM are achieved

Characterization of duck enteritis virus UL53 gene and glycoprotein K

<p>Abstract</p> <p>Background</p> <p>Most of the previous research work had focused on the epidemiology and prevention of duck enteritis virus (DEV). Whilst with the development of protocols in molecular biology, nowadays more and more information about the genes of DEV was reported. But little information about DEV UL53 gene and glycoprotein K(gK) was known except our reported data.</p> <p>Results</p> <p>In our paper, the fluorescent quantitative real-time PCR(FQ-RT-PCR) assay and nucleic acid inhibition test were used to study the transcription characteristic of the DEV UL53 gene. Except detecting the mRNA of DEV UL53 gene, the product gK encoded by UL53 gene was detected through the expression kinetics of UL53 gene by the purified rabbit anti-UL53 protein polyclonal antibodies. Western-blotting and indirect immunofluorescence assays were used to detect gK. From the results of these experiments, the UL53 gene and gK were respectively identified as a late gene and a really late protein. On the other hand, the indirect immunofluorescence assay provided another information that the intracellular localization of DEV gK was mainly distributed in cytoplasm.</p> <p>Conclusions</p> <p>By way of conclusions, we conceded that DEV UL53 gene is a really late gene, which is coincident with properties of UL53 homologs from other herpesvirus, such as ILTV(Infectious Laryngotracheitis virus) and HSV-1(Herpes simplex virus type 1). The properties of intracellular localization about gK protein provided a foundation for further functional analysis and further studies will be focused on constructing of the UL53 gene DEV mutant.</p

Expression and characterization of duck enteritis virus gI gene

<p>Abstract</p> <p>Background</p> <p>At present, alphaherpesviruses gI gene and its encoding protein have been extensively studied. It is likely that gI protein and its homolog play similar roles in virions direct cell-to-cell spread of alphaherpesviruses. But, little is known about the characteristics of DEV gI gene. In this study, we expressed and presented the basic properties of the DEV gI protein.</p> <p>Results</p> <p>The special 1221-bp fragment containing complete open reading frame(ORF) of duck enteritis virus(DEV) gI gene was extracted from plasmid pMD18-T-gI, and then cloned into prokaryotic expression vector pET-32a(+), resulting in pET-32a(+)-gI. After being confirmed by PCR, restriction endonuclease digestion and sequencing, pET-32a(+)-gI was transformed into <it>E.coli </it>BL21(DE3) competent cells for overexpression. DEV gI gene was successfully expressed by the addition of isopropyl-β-D-thiogalactopyranoside(IPTG). SDS-PAGE showed that the recombinant protein His6-tagged gI molecular weight was about 61 kDa. Subsequently, the expressed product was applied to generate specific antibody against gI protein. The specificity of the rabbit immuneserum was confirmed by its ability to react with the recombinant protein His6-tagged gI. In addition, real time-PCR was used to determine the the levels of the mRNA transcripts of gI gene, the results showed that the DEV gI gene was transcribed most abundantly during the late phase of infection. Furthermore, indirect immunofluorescence(IIF) was established to study the gI protein expression and localization in DEV-infected duck embryo fibroblasts (DEFs), the results confirmed that the protein was expressed and located in the cytoplasm of the infected cells, intensively.</p> <p>Conclusions</p> <p>The recombinant prokaryotic expression vector of DEV gI gene was constructed successfully. The gI protein was successfully expressed by <it>E.coli </it>BL21(DE3) and maintained its antigenicity very well. The basic information of the transcription and intracellular localization of gI gene were presented, that would be helpful to assess the possible role of DEV gI gene. The research will provide useful clues for further functional analysis of DEV gI gene.</p